Athra G. S. Computational Methods to Study properties of the medicinal compound, Tromantadine
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Abstract
Tromantadine is a drug commonly prescribed for curing herpes simplex virus. This medicine is also called Viru-Merz and Viru-Merz Serol. Tromantadine usually utilized to inhibit the penetration of the virus. To examine the biological activity of tromantadine, a theoretical study was achieved using the Gaussian software program 09. The geometrical arrangement and energy gap (ΔE) of this drug were determined by Density Functional Theory (DFT) on the best set 6-311++G. Moreover, Tromantadine properties were studied through the estimation of the HOMO and LUMO orbitals. In the molecular structure, the charge on every atom was established via atomic charge distribution. Additionally, structure of was analyzed by molecular electrostatic potential, which showed this compound structure posses a slight electronegativity.
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Ostheimer KE, Busch T, Görtelmeyer R, Hahn KD. Randomized double-blind trial of
tromantadine versus aciclovir in recurrent herpes orofacialis. Arzneimittel-Forschung. September. 1989;39 (9):1152–1155.
Diezel W, Michel G, Görtelmeyer R, Ostheimer KE. Efficacy of tromantadine and aciclovir in the topical treatment of recurrent herpes orofacialis. Comparison in a clinical trial. Arzneimittel-Forschung. April.1993;43(4):491–496.
Rosenthal KS, Sokol MS, Ingram RL, Subramanian R, Fort RC. Tromantadine: inhibitor of early and late events in herpes simplex virus replication. Antimicrobial Agents and Chemotherapy. ,December.1982;22(6):1031–1036. doi:10.1128/aac.22.6.1031.
Sager A G, Abaies, JK, Katoof ZR. Design, Molecular Docking, ADMET Studies, Synthesis, Characterization, and Antimicrobial of Nicotinamide Derivatives via Mannich reaction. Iraqi Journal of Science. 2025;66(3):1-17. https://dx.doi.org/10.24996/ijs.2025.66.3.2.
Sager AG, Salah AS, Mekky AH. Microwave Synthesis, Characterization of Some Novel Curcumin Compound and its Metal Complexes with Antimicrobial, Antioxidant Studies. International Journal of Medical Research and Pharmaceutical. 2020;12(1):429-448.
https:// doi.org/10.31838/ijpr/2020.12.01.200.
Zhu XY, Li QX., Kong Y. A novel human single-domain antibody-drug conjugate targeting CEACAM5 exhibits potent in vitro and in vivo antitumor activity. Acta Pharmacologica Sinica - Natu 2024;45(3): 609-618. https://10.1038/s41401-023-01200-9.
Rossmann MG. The structure of antiviral agents that inhibit uncoating when complexed with viral capsids. Antiviral Research.1989; 1(1):3-13. https://10.1016/0166-3542(89)90016-8.
Sundareswaran T, Jagan R, Karthikeya N, Boaz BM. Rational analysis of hydrogen bonding interaction in phenazine, 2-hydroxynaphthalene (1:1) cocrystal: from molecular modeling to photophysical properties. ournal of Molecular Modeling.2024;30(10): 351.
Bakker MJ, Mládek A, Semrád H, Zapleta V, Pavlíková Přecechtělová J. Improving IDP theoretical chemical shift accuracy and efficiency through a combined MD/ADMA/DFT and machine learning approach. Physical Chemistry Chemical Physics. 2022;24(45):27678-27692.
Prajapati P, Pandey J, Tandon P, Sinha K, Shimpi MR. Molecular Structural, Hydrogen Bonding Interactions, and Chemical Reactivity Studies of Ezetimibe-L-Proline Cocrystal Using Spectroscopic and Quantum Chemical Approach. Frontiers in Chemistry. 2022;10:848014.
Zayed EM, Zayed MA, Abd El Salam HA, Noamaan MA.Novel Triazole Thiole ligand and some of its metal chelates: Synthesis, structure charactertization, thermal behavior in comparison with computational caculations and biological activities. Computational Biology and Chemistry. 2019:78:260-272.
Arulaabaranam K, Muthu S, Mani G, Ben Geoffrey AS .Speculative assessment,
molecular composition, PDOS, topology exploration (ELF, LOL, RDG), ligand-protein interactions, on 5-bromo-3-nitropyridine-2-carbonitrile. Heliyon.2021; 7(5): 07061.
Pinzi L, Rastelli G. Molecular Docking: Shifting Paradigms in Drug Discovery. International Journal of Molecular Sciences.2019; 20(18):4331.
Morales-Bayuelo A, Sánchez-Márquez J. Receptor-Based Pharmacophore Modelling of a series of ligands used as inhibitors of the SARS-CoV-2 virus by complementary theoretical approaches, molecular docking, an reactivity descriptors. F1000Researchs. 2023;12:749.
Razooqi MS, Al-Ani HN.Quantum Me chanical Calculations and Electrochemical Study of Vibrational Frequencies, Energies in Some Flavonoids molecules. Iraqi Journal Sceince. 2022;63(6):2331-2344. https://doi.10.24996/ijs.2022.63.6.2
Obayes H R, Al-Amiery AA, Alwan HG, Abdullah TA, Kadhum AAH, Mohamad AB. Sulphonamides as corrosion inhibitor: Experimental and DFT studies. Journal Molecular. Structure .2017;1138:27–34. https://doi.org/10.1016/j.molstruc.2017.02.100.
Stephens PJ, Devlin F, Chabalowski C, Frisch MJ. An initio calculation of vibrational absorption and circular dichroism spectra using density functional force fields. Journal. Physical Chemical B .1994:98:11623– 11627. https://doi.org/10.1021/j100096a001.
Aquino AAJ , Borges I, Nieman, R., Köhn A, Lischka H. Intermolecular interactions and charge transfer transitions in aromatic hydrocarbon-tetracyanoethylene complexes. Journals Physical Chemistry Chemical Physics. 2021;16:20586- 20597. https://doi.org/10.1039/C4CP02900.
Echegaray E, Cárdenas C, Rabi S, Rabi N, Lee S, Zadeh FH. In pursuit of negative Fukui functions: Examples where the highest occupied molecular orbital fails to dominate the chemical reactivity. J. Mol.Model. 2019;19: 2779–2783. https://doi.10.1007/s00894-012-1637-3.
Balachandar S, Dhandapani M. Biological action of molecular adduct pyrazole: trichloroacetic acid on Candida albicans and ct DNA - a combined experimental, Fukui functions calculation and molecular docking analysis. Journal of Molecular Structure. 2019; 1184:129-138.
https://doi.org/10.1016/j.molstruc.2019.02.006.
Parr R G, Yang W. Density functional approach to the frontier-electron theory of chemical Reactivity. Journal of the American Chemical Society. 1989;106:4049-4050.
https://doi.org/10.1021/ja00326a036.
Gazquez J L , Mendez F. The hard and soft acids and bases principle: an atoms in molecules Viewpoint. Journal of Physical Chemistry. 1994; 984:591-4593. https://doi.org/10.1021/j100068a018.
Mulliken R S. Electronic population analysis on LCAO-MO molecular wave functions. I. Journal of Chemical Physics. 1955;23M:1833-1840. https://doi.org/10.1063/1.1740588.
Laplaza R, Peccati, F, Boto R A, Quan C, Carbone A, Piquemal J-P. NCIPLOT and the
analysis of noncovalent interactions using the reduced density gradient. Wiley Interdisciplinary Reviews:Computational Molecular Scienc. 2021;11(2): 1-37. https://doi.org/10.1002/wcms.1497
